diff --git a/deps/agent-native b/deps/agent-native
index cb21ec4..79e1a8f 160000
--- a/deps/agent-native
+++ b/deps/agent-native
@@ -1 +1 @@
-Subproject commit cb21ec4e2a0bc50a8b9ef5686b77ea3af19b8b7f
+Subproject commit 79e1a8fa85b8195ae27139934e999d5ceee78fe3
diff --git a/deps/agent-squad b/deps/agent-squad
index 931e5ae..90077b6 160000
--- a/deps/agent-squad
+++ b/deps/agent-squad
@@ -1 +1 @@
-Subproject commit 931e5ae410299f29d66d819ef2c83e7b06c8d57b
+Subproject commit 90077b660101ffae843d37a28d528bff612d93d0
diff --git a/internal/runtime/llm_direct.go b/internal/runtime/llm_direct.go
index 675b424..aaeca00 100644
--- a/internal/runtime/llm_direct.go
+++ b/internal/runtime/llm_direct.go
@@ -3,6 +3,8 @@ package runtime
 import (
 	"context"
 	"encoding/json"
+	"log"
+	"path/filepath"
 	"fmt"
 	"strings"
 	"sync"
@@ -12,6 +14,7 @@ import (
 	"agent-native/runtime/gates"
 	"agent-native/runtime/hooks"
 	agentllm "agent-native/runtime/llm"
+	agentsession "agent-native/runtime/session"
 	agenttools "agent-native/runtime/tools"
 	"agent-system-backend/internal/ctxasm"
 	"agent-system-backend/internal/squadadapter"
@@ -158,6 +161,18 @@ func (l *LLMRunner) runDirect(rc RunCtx, stream agentllm.StreamFunc, model strin
 	}
 
 	window, reserve, buffer := contextWindow(st.eff)
+	// 会话转录（N3 WP2）：产品会话 run 接入意图日志与恢复配对——
+	// JournalOnly 模式：journal 只作日志，上下文仍由 ctxasm 组装（产品管线
+	// 不冻结）；恢复写入的配对摘要以系统消息注入。打开失败降级为无
+	// Session（旧行为，不阻断对话）。
+	var sessStore *agentsession.Store
+	if sandbox := conversationSandbox(rc); sandbox != "" {
+		if opened, oerr := agentsession.Open(filepath.Join(sandbox, ".agentx", "transcript.jsonl")); oerr == nil {
+			sessStore = opened
+		} else {
+			log.Printf("[runtime] open session transcript: %v", oerr)
+		}
+	}
 	bus := hooks.New()
 	bus.On(func(c hooks.Call) hooks.Outcome {
 		if c.Event != hooks.Stop {
@@ -172,6 +187,8 @@ func (l *LLMRunner) runDirect(rc RunCtx, stream agentllm.StreamFunc, model strin
 	res, err := nruntime.Run(rc.Context(), nruntime.Config{
 		Model:                  model,
 		History:                history,
+		Session:                sessStore,
+		JournalOnly:            sessStore != nil,
 		Tools:                  reg,
 		Stream:                 wrapped,
 		MaxTurns:               maxTurns,
diff --git a/internal/runtime/llm_direct_n3_test.go b/internal/runtime/llm_direct_n3_test.go
new file mode 100644
index 0000000..d1f9bf0
--- /dev/null
+++ b/internal/runtime/llm_direct_n3_test.go
@@ -0,0 +1,126 @@
+package runtime
+
+import (
+	"context"
+	"path/filepath"
+	"strings"
+	"testing"
+
+	agentllm "agent-native/runtime/llm"
+	agentsession "agent-native/runtime/session"
+	core "agent-system-core"
+)
+
+// ---- N3 WP2：产品会话路径持久化（验收① 产品层机器证据）----
+
+func textTurns(texts ...string) [][]agentllm.Event {
+	out := make([][]agentllm.Event, 0, len(texts))
+	for _, t := range texts {
+		out = append(out, []agentllm.Event{
+			{Kind: agentllm.KindTextDelta, Text: t},
+			{Kind: agentllm.KindMessageEnd, Message: agentllm.Message{Role: agentllm.RoleAssistant, Content: t, StopReason: agentllm.StopEnd}},
+		})
+	}
+	return out
+}
+
+// 杀窗口形态的种子转录：新 run 前配对修复成立，且 run 正常产出。
+func TestDirectRunPairsAfterKillSeed(t *testing.T) {
+	sandbox := t.TempDir()
+	sess, err := agentsession.Open(filepath.Join(sandbox, ".agentx", "transcript.jsonl"))
+	if err != nil {
+		t.Fatal(err)
+	}
+	for _, m := range []agentllm.Message{
+		{Role: agentllm.RoleSystem, Content: "sys"},
+		{Role: agentllm.RoleUser, Content: "早前"},
+		{Role: agentllm.RoleAssistant, StopReason: agentllm.StopToolCalls, ToolCalls: []agentllm.ToolCall{{ID: "c1", Name: "run_python", Arguments: `{}`}}},
+	} {
+		if err := sess.Append(m); err != nil {
+			t.Fatal(err)
+		}
+	}
+	rc := &fakeRunCtx{
+		ctx: context.Background(), sandbox: sandbox,
+		prof: core.AgentProfile{Model: core.ModelRoute{Chat: "test-model"}},
+		history: []core.Message{
+			{ID: "m1", Role: core.RoleUser, Parts: []core.Part{{Type: core.PartText, Text: "还在吗"}}},
+		},
+	}
+	r := &LLMRunner{Stream: scriptStream(textTurns("还在"), nil)}
+	if err := r.Execute(rc); err != nil {
+		t.Fatalf("Execute: %v", err)
+	}
+	loaded, err := sess.Load()
+	if err != nil {
+		t.Fatal(err)
+	}
+	var paired bool
+	for _, m := range loaded {
+		if m.Role == agentllm.RoleTool && m.ToolCallID == "c1" {
+			paired = true
+			if !m.IsError || !strings.Contains(m.Content, "进程中断") {
+				t.Fatalf("兜底配对形态不对：%+v", m)
+			}
+		}
+	}
+	if !paired {
+		t.Fatalf("杀窗口调用未配对：%#v", loaded)
+	}
+}
+
+// JournalOnly 语义：上下文始终由 store 历史组装（每跑都在、恰好一次、
+// 不丢不重）；journal 不吞种子历史。
+func TestDirectRunSeedsStoreHistoryOnce(t *testing.T) {
+	sandbox := t.TempDir()
+	rc := &fakeRunCtx{
+		ctx: context.Background(), sandbox: sandbox,
+		prof: core.AgentProfile{Model: core.ModelRoute{Chat: "test-model"}},
+		history: []core.Message{
+			{ID: "m1", Role: core.RoleUser, Parts: []core.Part{{Type: core.PartText, Text: "历史一"}}},
+			{ID: "m2", Role: core.RoleAssistant, Parts: []core.Part{{Type: core.PartText, Text: "回复一"}}},
+			{ID: "m3", Role: core.RoleUser, Parts: []core.Part{{Type: core.PartText, Text: "最新"}}},
+		},
+	}
+	var requests [][]agentllm.Message
+	base := scriptStream(textTurns("一答", "二答"), nil)
+	r := &LLMRunner{Stream: func(ctx context.Context, model string, msgs []agentllm.Message, tools []agentllm.ToolDecl, opts agentllm.StreamOptions) <-chan agentllm.Event {
+		requests = append(requests, append([]agentllm.Message{}, msgs...))
+		return base(ctx, model, msgs, tools, opts)
+	}}
+	if err := r.Execute(rc); err != nil {
+		t.Fatalf("first Execute: %v", err)
+	}
+	// 第二跑：同一 rc（新 user 消息由 history 尾部提供）。
+	rc.history = append(rc.history, core.Message{ID: "m4", Role: core.RoleUser, Parts: []core.Part{{Type: core.PartText, Text: "再来"}}})
+	if err := r.Execute(rc); err != nil {
+		t.Fatalf("second Execute: %v", err)
+	}
+	if len(requests) < 2 {
+		t.Fatalf("stream 调用数 = %d", len(requests))
+	}
+	for i, req := range requests {
+		count := 0
+		for _, m := range req {
+			if m.Content == "历史一" {
+				count++
+			}
+		}
+		if count != 1 {
+			t.Fatalf("第 %d 跑历史中「历史一」必须恰好一次，得到 %d", i+1, count)
+		}
+	}
+	sess, err := agentsession.Open(filepath.Join(sandbox, ".agentx", "transcript.jsonl"))
+	if err != nil {
+		t.Fatal(err)
+	}
+	loaded, err := sess.Load()
+	if err != nil {
+		t.Fatal(err)
+	}
+	for _, m := range loaded {
+		if m.Content == "历史一" {
+			t.Fatalf("journal 不得吞种子历史：%#v", loaded)
+		}
+	}
+}
diff --git a/internal/runtime/llm_test.go b/internal/runtime/llm_test.go
index c2086a3..62c89b9 100644
--- a/internal/runtime/llm_test.go
+++ b/internal/runtime/llm_test.go
@@ -39,6 +39,7 @@ type fakeRunCtx struct {
 	history             []core.Message // 非 nil 时覆盖默认历史
 	bgID                string
 	bgErr               error
+	sandbox             string // 非空时 ConversationSandbox 返回之（N3 WP2 转录测试）
 	bgCalls             int
 }
 
@@ -94,6 +95,13 @@ func (f *fakeRunCtx) SpawnBackground(agentID, name, task, hint string) (core.ID,
 	}
 	return f.bgID, nil
 }
+func (f *fakeRunCtx) ConversationSandbox() string {
+	if f.sandbox != "" {
+		return f.sandbox
+	}
+	return ""
+}
+
 func (f *fakeRunCtx) Attachments() []core.ParsedDocument { return nil }
 func (f *fakeRunCtx) Tools() []core.ToolDesc             { return nil }
 func (f *fakeRunCtx) Subtask() string                    { return "" }